Package: GOCompare 1.0.2.1
Chrystian Camilo Sosa
GOCompare: Comprehensive GO Terms Comparison Between Species
Supports the assessment of functional enrichment analyses obtained for several lists of genes and provides a workflow to analyze them between two species via weighted graphs. Methods are described in Sosa et al. (2023) <doi:10.1016/j.ygeno.2022.110528>.
Authors:
GOCompare_1.0.2.1.tar.gz
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GOCompare.pdf |GOCompare.html✨
GOCompare/json (API)
# Install 'GOCompare' in R: |
install.packages('GOCompare', repos = c('https://ccsosa.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ccsosa/gocompare/issues
- A_thaliana - A thaliana functional enrichment analysis of 2224 ortholog genes related to cancer-hallmarks
- A_thaliana_compress - A thaliana functional enrichment analysis results for "AID","DCE","RCD","SPS" cancer-hallmarks
- H_sapiens - H. sapiens functional enrichment analysis of 5494 genes related to cancer-hallmarks
- H_sapiens_compress - H. sapiens functional enrichment analysis results for "AID","DCE","RCD","SPS" cancer-hallmarks
- comparison_ex_compress - Functional enrichment analysis comparison between H. sapiens and A. thaliana for "AID","DCE","RCD","SPS" cancer-hallmarks
- comparison_ex_compress_CH - Functional enrichment analysis comparison between H. sapiens and A. thaliana for "DCE", and "RCD" cancer-hallmarks. This dataset contains 10 GO terms per category to allow a fast run of the function graph_two_GOspecies.
Last updated 1 months agofrom:bc090c2c80. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 23 2024 |
R-4.5-win | NOTE | Oct 23 2024 |
R-4.5-linux | NOTE | Oct 23 2024 |
R-4.4-win | NOTE | Oct 23 2024 |
R-4.4-mac | NOTE | Oct 23 2024 |
R-4.3-win | NOTE | Oct 23 2024 |
R-4.3-mac | NOTE | Oct 23 2024 |
Exports:compareGOspeciesevaluateCAT_speciesevaluateGO_speciesgraph_two_GOspeciesgraphGOspeciesmostFrequentGOs
Dependencies:apecliclustercolorspacecpp11digestfansifarverggplot2ggrepelgluegtableigraphisobandlabelinglatticelifecyclemagrittrMASSmathjaxrMatrixmgcvmunsellnlmepermutepillarpkgconfigR6RColorBrewerRcpprlangscalesstringistringrtibbleutf8vctrsveganviridisLitewithr